PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3036_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SRS
Protein Properties Length: 336aa    MW: 37302.9 Da    PI: 7.052
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3036_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702227.52.5e-701062722154
      DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...........kskkqsalsst 89 
                 r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++a+s++++++k kr             ++    ++ +t
  RrC3036_p1 106 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSATSRETQNAKAKRLRegnggdnddkdHIGGGGSALAT 204
                 7899********************************************************999998555555555444578877776667778899999 PP

      DUF702  90 klssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
                 +l++a+s++ le+++ lP+evss+avfrcvrvss++d  +e+e+aYqtav+igGhvfkGiLydqG+++
  RrC3036_p1 205 RLVNANSNSGLEVNQnLPPEVSSPAVFRCVRVSSIEDdeDEQEYAYQTAVNIGGHVFKGILYDQGPDQ 272
                 99****9999998766*******************99434456***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051426.5E-65109271IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.8E-28111153IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016245.6E-27221270IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAGFFYLGGR DNINNKQDHH QQDKSNYLYL YKDEIYNTNK GFEIWPPQYF QQQQEQQQHH  60
VTASTNLYSF GMVPSSSSNN NTNNRSRSLY FNVVSDHEPG GFTVTRQGGM NCQDCGNQAK  120
KDCPHMRCRT CCKSRGFHCQ THVKSTWVPA AKRRERLAQL ASLQHHSATS RETQNAKAKR  180
LREGNGGDND DKDHIGGGGS ALATRLVNAN SNSGLEVNQN LPPEVSSPAV FRCVRVSSIE  240
DDEDEQEYAY QTAVNIGGHV FKGILYDQGP DQDHHHQLDL LASTATTTNA EEIAAKTAVT  300
VAANNNNGLM MDPSSLYPAQ LNSFIAGTPF FTPPRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2052670.0GU205267.1 Brassica rapa subsp. pekinensis short internode related sequence 5 (SRS5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013672765.10.0PREDICTED: protein SHI RELATED SEQUENCE 5-like
SwissprotQ9LQZ50.0SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A078IBM80.0A0A078IBM8_BRANA; BnaAnng09150D protein
STRINGBra008203.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-173SHI-related sequence 5